PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2547_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 297aa    MW: 33138.6 Da    PI: 5.4515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2547_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.7e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + + ++   +W ++a++++ g+t  +++  ++ 
       RrC2547_p1 28 KWTAEENKKFENALAFYDKDtpdRWFKVAAMLP-GKTVGDVIKQYRE 73
                     8********************************.******9999986 PP

2Myb_DNA-binding46.39.9e-15140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
       RrC2547_p1 140 PWTEEEHRQFLIGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 184
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-42374IPR009057Homeodomain-like
PROSITE profilePS512939.5612479IPR017884SANT domain
SMARTSM007172.1E-102577IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-112781IPR009057Homeodomain-like
CDDcd001672.47E-82874No hitNo description
PfamPF002493.2E-72873IPR001005SANT/Myb domain
PROSITE profilePS5129422.606133189IPR017930Myb domain
SuperFamilySSF466891.72E-17135188IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17136188IPR006447Myb domain, plants
SMARTSM007172.4E-12137187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12137184IPR009057Homeodomain-like
PfamPF002494.6E-12140184IPR001005SANT/Myb domain
CDDcd001676.45E-11140185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSRGLEVMSP ATYIGTSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD RWFKVAAMLP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW GGYDAGNNGF NMNGYYFAAA  120
GGKRGSAART AEHERKKGVP WTEEEHRQFL IGLKKYGKGD WRNIARNFVT TRTPTQVASH  180
AQKYFIRQVN GGKDKRRSSI HDITTVNVPD SPDTGAADTS TANAPCSPPS LGGSQREASD  240
QWEGQTIYDE TSAAFYNQNA FQETLLGMSS TPYMAKLQEQ SFLNASQFES YNAYLQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-172693875RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1181350.0AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04.
GenBankAY5195290.0AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds.
GenBankBT0061220.0BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411010.10.0hypothetical protein EUTSA_v10017008mg
SwissprotQ8S9H71e-95DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4MIQ70.0V4MIQ7_EUTSA; Uncharacterized protein
STRINGBra005139.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.10.0MYB family protein